When we see the Jedi leading the clones on various planets just before Order 66 is executed, exactly who are they fighting? If the Separatists consist of individual planetary systems that have broken away from the Republic, are the Jedi and clones conquering these systems city by city to bring them back into the Republic? If so, you'd have a situation that would make the American Civil War and Viet Nam look like a picnic. Imagine militarily forcing billions or trillions of people against their will back into the Republic. In AOTC, Yoda spoke of Dooku rallying systems to his cause, so I assume that almost none of the Separatist worlds would welcome the Jedi as liberators. Maybe I'm missing something here. (Please provide a link if there is a thread on this already).