Frankly I think that deleting the Padme/Obi-Wan scene is a plus for the film. By its absence, it puts you more into Anakin's shoes as his paranoia starts to grow. If it was there in the film, we'd see it's just a nice, innocent little moment between friends. We'd know that Anakin is starting to get suspicious and slipping into the dark side. But without seeing it, we're more in the dark like him.